{ "_id": "6a1d314b1d7bb097a0a3b0b9", "Package": "mortAAR", "Type": "Package", "Title": "Analysis of Archaeological Mortality Data", "Version": "1.1.8", "Authors@R": "c(\nperson(\"Nils\", \"Mueller-Scheessel\", , \"nils.mueller-scheessel@ufg.uni-kiel.de\", role = c(\"aut\", \"cre\", \"cph\"),\ncomment = c(ORCID = \"0000-0001-7992-8722\")),\nperson(\"Martin\", \"Hinz\", , \"martin.hinz@ufg.uni-kiel.de\", role = \"aut\"),\nperson(\"Clemens\", \"Schmid\", , \"clemens@nevrome.de\", role = \"aut\"),\nperson(\"Christoph\", \"Rinne\", , \"crinne@ufg.uni-kiel.de\", role = \"aut\"),\nperson(\"Daniel\", \"Knitter\", , \"knitter@geographie.uni-kiel.de\", role = \"aut\"),\nperson(\"Wolfgang\", \"Hamer\", , \"hamer@geographie.uni-kiel.de\", role = \"aut\"),\nperson(\"Dirk\", \"Seidensticker\", , \"dirk.seidensticker@uni-tuebingen.de\", role = \"aut\"),\nperson(\"Franziska\", \"Faupel\", , \"ffaupel@ufg.uni-kiel.de\", role = \"aut\"),\nperson(\"Carolin\", \"Tietze\", , \"ctietze1991@gmail.com\", role = \"aut\"),\nperson(\"Nicole\", \"Grunert\", , \"nicolegrunert@gmail.com\", role = \"aut\")\n)", "Maintainer": "Nils Mueller-Scheessel\n", "Description": "A collection of functions for the analysis of\narchaeological mortality data (on the topic see e.g.\nChamberlain 2006\n).\nIt takes demographic data in different formats and displays the\nresult in a standard life table as well as plots the relevant\nindices (percentage of deaths, survivorship, probability of\ndeath, life expectancy, percentage of population). It also\nchecks for possible biases in the age structure and applies\ncorrections to life tables.", "Date": "2025-04-10", "License": "GPL-3 | file LICENSE", "Encoding": "UTF-8", "LazyData": "true", "RoxygenNote": "7.3.3", "RdMacros": "Rdpack", "VignetteBuilder": "knitr", "Config/testthat/edition": "3", "URL": "https://github.com/ISAAKiel/mortAAR,\nhttps://isaakiel.github.io/mortAAR/", "BugReports": "https://github.com/ISAAKiel/mortAAR/issues", "Config/pak/sysreqs": "libicu-dev", "Repository": "https://isaakiel.r-universe.dev", "Date/Publication": "2026-05-02 19:19:54 UTC", "RemoteUrl": "https://github.com/isaakiel/mortaar", "RemoteRef": "HEAD", "RemoteSha": "799f279c1d904e07ccddb509510dc39573679c93", "NeedsCompilation": "no", "Packaged": { "Date": "2026-06-01 06:56:06 UTC", "User": "root" }, "Author": "Nils Mueller-Scheessel [aut, cre, cph] (ORCID:\n),\nMartin Hinz [aut],\nClemens Schmid [aut],\nChristoph Rinne [aut],\nDaniel Knitter [aut],\nWolfgang Hamer [aut],\nDirk Seidensticker [aut],\nFranziska Faupel [aut],\nCarolin Tietze [aut],\nNicole Grunert [aut]", "MD5sum": "33fe14256e229652456b58343f3f1137", "_user": "isaakiel", "_type": "src", "_file": "mortAAR_1.1.8.tar.gz", "_fileid": "96fee5f151b19efeb5021c06a1c33470372cb12a1122b6a33c26a441e0a4afb5", "_filesize": 2549774, "_sha256": "96fee5f151b19efeb5021c06a1c33470372cb12a1122b6a33c26a441e0a4afb5", "_created": "2026-06-01T06:56:06.000Z", "_published": "2026-06-01T07:14:19.305Z", "_distro": "noble", "_jobs": [ { "job": 78801481516, "time": 162, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "NOTE", "artifact": "7325198937" }, { "job": 78801481542, "time": 154, "config": "linux-release-x86_64", "r": "4.6.0", "check": "NOTE", "artifact": "7325197312" }, { "job": 78801481530, "time": 113, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "NOTE", "artifact": "7325207469" }, { "job": 78801481525, "time": 127, "config": "macos-release-arm64", "r": "4.6.0", "check": "NOTE", "artifact": "7325433437" }, { "job": 78801041035, "time": 202, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7325156610" }, { "job": 78801481508, "time": 125, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7325189554" }, { "job": 78801481550, "time": 100, "config": "windows-devel", "r": "4.7.0", "check": "NOTE", "artifact": "7325183336" }, { "job": 78801481552, "time": 102, "config": "windows-oldrel", "r": "4.5.3", "check": "NOTE", "artifact": "7325184020" }, { "job": 78801481554, "time": 115, "config": "windows-release", "r": "4.6.0", "check": "NOTE", "artifact": "7325187231" } ], "_buildurl": "https://github.com/r-universe/isaakiel/actions/runs/26739840264", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/isaakiel/mortaar", "_commit": { "id": "799f279c1d904e07ccddb509510dc39573679c93", "author": "nmueller18 ", "committer": "nmueller18 ", "message": "Further test added no.3.\n", "time": 1777749594 }, "_maintainer": { "name": "Nils Mueller-Scheessel", "email": "nils.mueller-scheessel@ufg.uni-kiel.de", "orcid": "0000-0001-7992-8722" }, "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 3.5.0", "role": "Depends" }, { "package": "magrittr", "version": ">= 1.5", "role": "Imports" }, { "package": "Rdpack", "version": ">= 0.4-20", "role": "Imports" }, { "package": "reshape2", "version": ">= 1.4.2", "role": "Imports" }, { "package": "methods", "version": ">= 3.3.3", "role": "Imports" }, { "package": "tibble", "version": ">= 3.0.3", "role": "Imports" }, { "package": "rlang", "version": ">= 1.1.1", "role": "Imports" }, { "package": "flexsurv", "version": ">= 2.2.2", "role": "Imports" }, { "package": "stats", "version": ">= 4.3.1", "role": "Imports" }, { "package": "checkmate", "role": "Imports" }, { "package": "testthat", "role": "Suggests" }, { "package": "knitr", "role": "Suggests" }, { "package": "rmarkdown", "role": "Suggests" }, { "package": "tidyr", "role": "Suggests" }, { "package": "dplyr", "role": "Suggests" }, { "package": "ggplot2", "role": "Suggests" }, { "package": "withr", "role": "Suggests" } ], "_owner": "isaakiel", "_selfowned": true, "_usedby": 0, "_updates": [ { "week": "2025-47", "n": 1 }, { "week": "2026-06", "n": 1 }, { "week": "2026-08", "n": 1 }, { "week": "2026-14", "n": 1 }, { "week": "2026-18", "n": 11 } ], "_tags": [], "_topics": [ "anthropology", "archaeology", "demography", "statistics" ], "_stars": 19, "_contributors": [ { "user": "nevrome", "count": 168, "uuid": 10789038 }, { "user": "nmueller18", "count": 152, "uuid": 20249289 }, { "user": "martinhinz", "count": 46, "uuid": 3285169 }, { "user": "chrinne", "count": 18, "uuid": 17128652 }, { "user": "ffaupel", "count": 14, "uuid": 17333068 }, { "user": "dakni", "count": 12, "uuid": 17738222 }, { "user": "ctietze91", "count": 11, "uuid": 26183035 }, { "user": "quassinja", "count": 7, "uuid": 24542470 }, { "user": "capsizinghr", "count": 4, "uuid": 44018301 }, { "user": "dirkseidensticker", "count": 3, "uuid": 6630811 }, { "user": "olivroy", "count": 1, "uuid": 52606734 } ], "_userbio": { "uuid": 19709572, "type": "organization", "name": "Initiative for Statistical Analysis in Archaeology Kiel (ISAAK)" }, "_downloads": { "count": 604, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/mortAAR" }, "_devurl": "https://github.com/isaakiel/mortaar", "_pkgdown": "https://isaakiel.github.io/mortAAR/", "_searchresults": 20, "_rbuild": "4.6.0", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/mortAAR.html", "extra/NEWS.html", "extra/NEWS.txt", "extra/readme.html", "extra/readme.md", "manual.pdf" ], "_homeurl": "https://github.com/isaakiel/mortaar", "_realowner": "isaakiel", "_cranurl": true, "_releases": [ { "version": "1.0.0", "date": "2017-10-20" }, { "version": "1.0.1", "date": "2018-06-20" }, { "version": "1.0.2", "date": "2019-07-31" }, { "version": "1.1.0", "date": "2020-12-01" }, { "version": "1.1.1", "date": "2021-05-25" }, { "version": "1.1.2", "date": "2022-04-26" }, { "version": "1.1.4", "date": "2023-07-18" }, { "version": "1.1.5", "date": "2023-08-28" }, { "version": "1.1.6", "date": "2024-03-06" }, { "version": "1.1.7", "date": "2025-01-12" }, { "version": "1.1.8", "date": "2025-04-09" } ], "_exports": [ "as.mortaar_life_table", "as.mortaar_life_table_list", "halley.band", "is.mortaar_life_table", "is.mortaar_life_table_list", "life.table", "lt.correction", "lt.indices", "lt.population_size", "lt.representativity", "lt.reproduction", "lt.sexrelation", "pop.sim.gomp", "prep.life.table", "random.cat", "random.cat.apply" ], "_datasets": [ { "name": "aiterhofen_oedmuehlen", "title": "aiterhofen_oedmuehlen: Life table example", "object": "aiterhofen_oedmuehlen", "class": [ "data.frame" ], "fields": [ "Alter", "a", "Dx", "Sx", "qx", "lx", "dx", "Lx", "Tx", "ex", "rel.Bevx" ], "rows": 13, "table": true, "tojson": true }, { "name": "gallery_graves", "title": "gallery_graves: Life table example", "object": "gallery_graves", "class": [ "data.frame" ], "fields": [ "indnr", "sex", "age", "site" ], "rows": 129, "table": true, "tojson": true }, { "name": "magdalenenberg", "title": "magdalenenberg: Life table example", "object": "magdalenenberg", "class": [ "data.frame" ], "fields": [ "a", "Dx" ], "rows": 13, "table": true, "tojson": true }, { "name": "muensingen", "title": "muensingen: Life table example", "object": "muensingen", "class": [ "data.frame" ], "fields": [ "age", "sex", "latene_phase", "grave_goods" ], "rows": 71, "table": true, "tojson": true }, { "name": "nitra", "title": "nitra: Life table example", "object": "nitra", "class": [ "data.frame" ], "fields": [ "X", "no", "sex", "age_start", "age_end" ], "rows": 75, "table": true, "tojson": true }, { "name": "odagsen_cm", "title": "odagsen_corpus.mandibulae: Life table example", "object": "odagsen_cm", "class": [ "data.frame" ], "fields": [ "age.group", "x", "a", "Dx", "dx", "lx", "qx", "Lx", "ex" ], "rows": 10, "table": true, "tojson": true }, { "name": "odagsen_mo", "title": "odagsen_margo.orbitalis: Life table example", "object": "odagsen_mo", "class": [ "data.frame" ], "fields": [ "age.group", "x", "a", "Dx", "dx", "lx", "qx", "Lx", "ex" ], "rows": 10, "table": true, "tojson": true }, { "name": "schleswig_ma", "title": "schleswig_ma: Life table example", "object": "schleswig_ma", "class": [ "data.frame" ], "fields": [ "x", "a", "Dx", "dx", "lx", "qx", "Lx", "Tx", "ex" ], "rows": 11, "table": true, "tojson": true } ], "_help": [ { "page": "aiterhofen_oedmuehlen", "title": "aiterhofen_oedmuehlen: Life table example", "concept": [ "lifetables" ], "topics": [ "aiterhofen_oedmuehlen" ] }, { "page": "gallery_graves", "title": "gallery_graves: Life table example", "concept": [ "lifetables" ], "topics": [ "gallery_graves" ] }, { "page": "halley.band", "title": "Halley band of the mortality profile of a skeletal population", "topics": [ "halley.band" ] }, { "page": "life.table", "title": "Calculates a life table", "topics": [ "life.table" ] }, { "page": "lt.correction", "title": "Calculates a corrected life table from a mortAAR life table", "topics": [ "lt.correction" ] }, { "page": "lt.indices", "title": "Generates indices from a mortAAR life table for use in other functions", "topics": [ "lt.indices" ] }, { "page": "lt.population_size", "title": "Calculates population size from a mortAAR life table or numeric values", "topics": [ "lt.population_size" ] }, { "page": "lt.representativity", "title": "Checks the representativity of the non-adult age groups in a mortAAR life table", "topics": [ "lt.representativity" ] }, { "page": "lt.reproduction", "title": "Calculates reproduction indices from a mortAAR life table", "topics": [ "lt.reproduction" ] }, { "page": "lt.sexrelation", "title": "Calculate masculinity index and maternal mortality from a mortAAR life table list", "topics": [ "lt.sexrelation" ] }, { "page": "magdalenenberg", "title": "magdalenenberg: Life table example", "concept": [ "lifetables" ], "topics": [ "magdalenenberg" ] }, { "page": "mortaar_life_table", "title": "mortaar_life_table and mortaar_life_table_list", "topics": [ "as.mortaar_life_table", "as.mortaar_life_table_list", "mortaar_life_table" ] }, { "page": "muensingen", "title": "muensingen: Life table example", "concept": [ "lifetables" ], "topics": [ "muensingen" ] }, { "page": "nitra", "title": "nitra: Life table example", "concept": [ "lifetables" ], "topics": [ "nitra" ] }, { "page": "odagsen_cm", "title": "odagsen_corpus.mandibulae: Life table example", "concept": [ "lifetables" ], "topics": [ "odagsen_cm" ] }, { "page": "odagsen_mo", "title": "odagsen_margo.orbitalis: Life table example", "concept": [ "lifetables" ], "topics": [ "odagsen_mo" ] }, { "page": "plot", "title": "Plot a mortaar_life_table or a mortaar_life_table_list", "topics": [ "plot" ] }, { "page": "pop.sim.gomp", "title": "Simulation of a population of adults with Gompertz distribution", "topics": [ "pop.sim.gomp" ] }, { "page": "prep.life.table", "title": "Creates the input for the function life.table", "topics": [ "prep.life.table" ] }, { "page": "print", "title": "Encode and print a mortaar_life_table or a mortaar_life_table_list", "topics": [ "print" ] }, { "page": "random.cat.apply", "title": "Generation of random age ranges", "topics": [ "random.cat", "random.cat.apply" ] }, { "page": "schleswig_ma", "title": "schleswig_ma: Life table example", "concept": [ "lifetables" ], "topics": [ "schleswig_ma" ] } ], "_readme": "https://github.com/isaakiel/mortaar/raw/HEAD/README.md", "_rundeps": [ "assertthat", "backports", "bbmle", "bdsmatrix", "checkmate", "cli", "cpp11", "data.table", "deSolve", "dplyr", "farver", "fastGHQuad", "flexsurv", "generics", "ggplot2", "glue", "gtable", "isoband", "labeling", "lattice", "lifecycle", "lsoda", "magrittr", "MASS", "Matrix", "mgcv", "mstate", "muhaz", "mvtnorm", "nlme", "numDeriv", "pillar", "pkgconfig", "plyr", "purrr", "quadprog", "R6", "rbibutils", "RColorBrewer", "Rcpp", "RcppArmadillo", "Rdpack", "reshape2", "rlang", "rstpm2", "S7", "scales", "statmod", "stringi", "stringr", "survival", "tibble", "tidyr", "tidyselect", "utf8", "vctrs", "viridisLite", "withr" ], "_vignettes": [ { "source": "background.Rmd", "filename": "background.html", "title": "Background", "engine": "knitr::rmarkdown", "headings": [ "Introduction", "Overview of features", "Ease and flexibility of the input", "Sophisticated means of computation", "Comprehensiveness of output", "Many further functions", "Conclusion", "References" ], "created": "2025-01-12 21:19:15", "modified": "2026-04-28 07:29:02", "commits": 2 }, { "source": "example_2.Rmd", "filename": "example_2.html", "title": "Example: European Iron Age", "engine": "knitr::rmarkdown", "headings": [ "Münsingen", "Archaeological background", "The data set", "Constructing the life table", "Mortality patterns", "Magdalenenberg", "Archaeological Background", "Comparing Early Iron Age (Magdalenenberg) and Middle/Late Iron Age (Münsingen-Rain)", "References" ], "created": "2025-01-12 21:19:15", "modified": "2026-04-28 07:29:02", "commits": 2 }, { "source": "example_1.Rmd", "filename": "example_1.html", "title": "Example: Neolithic Gallery graves", "author": "Clemens Schmid", "engine": "knitr::rmarkdown", "headings": [ "Load libraries", "Make test data available", "Clean up data", "Analysis preparation", "Analysis", "Plot", "References" ], "created": "2025-01-12 21:19:15", "modified": "2025-01-12 21:19:15", "commits": 1 }, { "source": "mortAAR.Rmd", "filename": "mortAAR.html", "title": "Introduction to mortAAR", "engine": "knitr::rmarkdown", "headings": [ "Import of data", "Displaying the life table", "Plotting the results", "Going further" ], "created": "2025-01-12 19:30:42", "modified": "2026-04-28 07:53:03", "commits": 7 }, { "source": "lt_correction.Rmd", "filename": "lt_correction.html", "title": "Life table correction", "engine": "knitr::rmarkdown", "headings": [ "Load libraries", "Smoothing of data", "Representativeness of data", "Correction of life table data after Bocquet-Appel and Masset", "References" ], "created": "2025-01-12 21:19:15", "modified": "2026-04-28 07:29:02", "commits": 2 }, { "source": "reproduction.Rmd", "filename": "reproduction.html", "title": "Reproduction", "engine": "knitr::rmarkdown", "headings": [ "Load libraries", "Introduction", "Indices of reproduction", "Mortality rate", "Birth and death rates according to Buikstra et al. 1986", "Reproduction rates", "Rate of dependent individuals", "Relation between female and male individuals", "Maternal mortality", "Population size", "References" ], "created": "2025-01-12 21:19:15", "modified": "2026-04-28 07:29:02", "commits": 2 } ], "_score": 7.7558748556724915, "_indexed": true, "_nocasepkg": "mortaar", "_universes": [ "isaakiel" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.1.8", "date": "2026-06-01T06:58:33.000Z", "distro": "noble", "commit": "799f279c1d904e07ccddb509510dc39573679c93", "fileid": "f87863d88116d658dc96bd62712154c56c27f4929b947eb67e18b78507f278af", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/isaakiel/actions/runs/26739840264" }, { "r": "4.6.0", "os": "linux", "version": "1.1.8", "date": "2026-06-01T06:58:29.000Z", "distro": "noble", "commit": "799f279c1d904e07ccddb509510dc39573679c93", "fileid": "f3293fffa70e7d6b93527ad75b7f324c91868c9e265615a6f1102744a72bf935", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/isaakiel/actions/runs/26739840264" }, { "r": "4.5.3", "os": "mac", "version": "1.1.8", "date": "2026-06-01T06:59:15.000Z", "commit": "799f279c1d904e07ccddb509510dc39573679c93", "fileid": "6c55bb3b17b0cc9e31a805ea0fe380ff1cecb13d9e8bfd3d09369348e85c8528", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/isaakiel/actions/runs/26739840264" }, { "r": "4.6.0", "os": "mac", "version": "1.1.8", "date": "2026-06-01T07:13:27.000Z", "commit": "799f279c1d904e07ccddb509510dc39573679c93", "fileid": "d00871208b911dc4da8e53f224807e7cea0534758c021b1099a2730feb228a1a", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/isaakiel/actions/runs/26739840264" }, { "r": "4.6.0", "os": "wasm", "version": "1.1.8", "date": "2026-06-01T06:58:30.000Z", "commit": "799f279c1d904e07ccddb509510dc39573679c93", "fileid": "e3d2e1fac72073bcf846acacf05ed1d26dc491e96f9835c67246174761087612", "status": "success", "buildurl": "https://github.com/r-universe/isaakiel/actions/runs/26739840264" }, { "r": "4.7.0", "os": "win", "version": "1.1.8", "date": "2026-06-01T06:57:26.000Z", "commit": "799f279c1d904e07ccddb509510dc39573679c93", "fileid": "517323ec11eaf6dfd32c38fb2d645f9d057412b702f3e8fde217bcc80b682c38", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/isaakiel/actions/runs/26739840264" }, { "r": "4.5.3", "os": "win", "version": "1.1.8", "date": "2026-06-01T06:57:28.000Z", "commit": "799f279c1d904e07ccddb509510dc39573679c93", "fileid": "237de605fac09787ce18e94ffbe8bd2459932c570fe48f7c0599084e8b06f8e7", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/isaakiel/actions/runs/26739840264" }, { "r": "4.6.0", "os": "win", "version": "1.1.8", "date": "2026-06-01T06:57:37.000Z", "commit": "799f279c1d904e07ccddb509510dc39573679c93", "fileid": "558803f94f7195f8e130c49d9e0ec34a8ec311995013fbdc7f6109ee1b1b2285", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/isaakiel/actions/runs/26739840264" } ] }